A 2D model for hydrodynamics and biology coupling applied to algae growth simulations
ESAIM: Mathematical Modelling and Numerical Analysis , Tome 47 (2013) no. 5, pp. 1387-1412.

Cultivating oleaginous microalgae in specific culturing devices such as raceways is seen as a future way to produce biofuel. The complexity of this process coupling non linear biological activity to hydrodynamics makes the optimization problem very delicate. The large amount of parameters to be taken into account paves the way for a useful mathematical modeling. Due to the heterogeneity of raceways along the depth dimension regarding temperature, light intensity or nutrients availability, we adopt a multilayer approach for hydrodynamics and biology. For free surface hydrodynamics, we use a multilayer Saint-Venant model that allows mass exchanges, forced by a simplified representation of the paddlewheel. Then, starting from an improved Droop model that includes light effect on algae growth, we derive a similar multilayer system for the biological part. A kinetic interpretation of the whole system results in an efficient numerical scheme. We show through numerical simulations in two dimensions that our approach is capable of discriminating between situations of mixed water or calm and heterogeneous pond. Moreover, we exhibit that a posteriori treatment of our velocity fields can provide lagrangian trajectories which are of great interest to assess the actual light pattern perceived by the algal cells and therefore understand its impact on the photosynthesis process.

DOI : 10.1051/m2an/2013072
Classification : 35Q35, 35Q92, 76D05, 76Z99
Mots-clés : hydrostatic Navier-Stokes equations, Saint-Venant equations, free surface stratified flows, multilayer system, kinetic scheme, droop model, raceway, hydrodynamics and biology coupling, algae growth
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     author = {Bernard, Olivier and Boulanger, Anne-C\'eline and Bristeau, Marie-Odile and Sainte-Marie, Jacques},
     title = {A {2D} model for hydrodynamics and biology coupling applied to algae growth simulations},
     journal = {ESAIM: Mathematical Modelling and Numerical Analysis },
     pages = {1387--1412},
     publisher = {EDP-Sciences},
     volume = {47},
     number = {5},
     year = {2013},
     doi = {10.1051/m2an/2013072},
     mrnumber = {3100768},
     language = {en},
     url = {http://archive.numdam.org/articles/10.1051/m2an/2013072/}
}
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Bernard, Olivier; Boulanger, Anne-Céline; Bristeau, Marie-Odile; Sainte-Marie, Jacques. A 2D model for hydrodynamics and biology coupling applied to algae growth simulations. ESAIM: Mathematical Modelling and Numerical Analysis , Tome 47 (2013) no. 5, pp. 1387-1412. doi : 10.1051/m2an/2013072. http://archive.numdam.org/articles/10.1051/m2an/2013072/

[1] E Audusse, Modelisation hyperbolique et analyse numerique pour les ecoulements en eaux peu profondes. Ph.D. thesis. Université Pierre et Marie Curie - Paris VI (2004).

[2] E. Audusse and M.-O. Bristeau, Transport of pollutant in shallow water flows: A two time steps kinetic method. ESAIM: M2AN 37 (2003) 389-416. | Numdam | MR | Zbl

[3] E. Audusse and M.-O. Bristeau, A well-balanced positivity preserving second-order scheme for shallow water flows on unstructured meshes. J. Comput. Phys. 206 (2005) 311-333. | MR | Zbl

[4] E. Audusse, M.-O. Bristeau, M. Pelanti and J. Sainte-Marie, Approximation of the hydrostatic Navier-Stokes system for density stratified flows by a multilayer model. Kinetic interpretation and numerical validation. J. Comput. Phys. 230 (2011) 3453-3478. | MR

[5] E. Audusse, M.-O. Bristeau, B. Perthame and J. Sainte-Marie, A multilayer saint-venant system with mass exchanges for shallow water flows. Derivation and numerical validation. ESAIM: M2AN 45 (2011) 169-200. | Numdam | MR | Zbl

[6] E. Audusse, F. Bouchut, M.-O. Bristeau, R. Klein and Be. Perthame, A fast and stable well-balanced scheme with hydrostatic reconstruction for shallow water flows. SIAM J. Sci. Comput. 25 (2004) 2050-2065. | MR | Zbl

[7] S.-D. Ayata, M. Lévy, O. Aumont, A. Sciandra, J. Sainte-Marie, A. Tagliabue and O. Bernard, Phytoplankton growth formulation in marine ecosystem models: should we take into account photo-acclimation and variable stochiometry in oligotrophic areas? To appear in J. Marine Syst.

[8] M. Baklouti, F. Diaz, C. Pinazo, V. Faure and B. Queguiner, Investigation of mechanistic formulations depicting phytoplankton dynamics for models of marine pelagic ecosystems and description of a new model. Progr. Oceanogr. 71 (2006) 1-33.

[9] A.-J.-C. Barré de Saint-Venant, Théorie du mouvement non permanent des eaux, avec application aux crues des rivières et làintroduction des marées dans leur lit. Comptes Rendus des Séances de l'Académie des Sciences, Paris 73 (1871) 147-154. | JFM

[10] O. Bernard, Hurdles and challenges for modelling and control of microalgae for co2 mitigation and biofuel production. J. Process Control 21 (2011) 1378-1389.

[11] O. Bernard and J.-L. Gouzé, Transient behavior of biological loop models, with application to the Droop model. Math. Biosci. 127 (1995) 19-43. | MR | Zbl

[12] O. Bernard and J.-L. Gouzé, Global qualitative behavior of a class of nonlinear biological systems: application to the qualitative validation of phytoplankton growth models. Artif. Intel. 136 (2002) 29-59. | MR | Zbl

[13] A.-C. Boulanger and J. Sainte-Marie, Analytical solutions for the free surface hydrostatic euler equations. Submitted to Nonlinearity (2011). | Zbl

[14] J.-F. Bourgat, P. Le Tallec, F. Mallinger, B. Perthame, Y. Qiu, C. boltzmann and navier-stokes, Research Report RR-2281, Projet MENUSIN. INRIA (1994).

[15] M.-O. Bristeau and J. Sainte-Marie, Derivation of a non-hydrostatic shallow water model; Comparison with Saint-Venant and Boussinesq systems. DCDS(B) 10 (2008) 733-759. | MR | Zbl

[16] M.-O. Bristeau, N. Goutal and J. Sainte-Marie, Numerical simulations of a non-hydrostatic shallow water model. Comput. Fluids 47 (2011) 51-64. | MR | Zbl

[17] V. Casulli, A semi-implicit finite difference method for non-hydrostatic, free-surface flows. Int. J. Numer. Methods Fluids 30 (1999) 425-440. | Zbl

[18] Y. Chisti, Biodiesel from microalgae. Biotech. Adv. 25 (2007) 294-306.

[19] M.R. Droop, Vitamin B12 and marine ecology. IV. the kinetics of uptake growth and inhibition in Monochrysis lutheri. J. Mar. Biol. Assoc. 48 (1968) 689-733.

[20] M.R. Droop, 25 years of algal growth kinetics, a personal view. Botanica Marina 16 (1983) 99-112.

[21] R.C. Dugdale, Nutrient limitation in the sea: dynamics, identification and significance. Limnol. Oceanogr. 12 (1967) 685-695.

[22] S. Esposito, V. Botte, D. Iudicone and M. Ribera D'Alcala, Numerical analysis of cumulative impact of phytoplankton photoresponses to light variation on carbon assimilation. J. Theor. Biol 261 (2009) 361-371. | MR

[23] R.J. Geider, H.L. Macintyre and T.M. Kana, A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature. Limnol Oceanogr 43 (1998) 679-694.

[24] J.-F. Gerbeau, and B. Perthame, Derivation of viscous saint-venant system for laminar shallow water; numerical validation. Discrete Contin. Dyn. Syst. Ser. B 1 (2001) 89-102. | MR | Zbl

[25] J.U. Grobbelaar, C.J. Soeder and E. Stengel, Modeling algal productivity in large outdoor cultures and waste treatment systems. Biomass 21 (1990) 297-314.

[26] H. Guterman, A. Vonshak and S. Ben-Yaakov, A macromodel for outdoor algal mass production. Biotechnol. Bioengineer. 35 (1990) 809-819.

[27] B.P. Han, Photosynthesis-irradiance response at physiological level: a mechanistic model. J. Theoret. Biol. 213 (2001) 121-127.

[28] B.P. Han, A mechanistic model of algal photoinhibition induced by photodamage to photosystem-ii. J. Theoret. Biology 214 (2002) 519-527.

[29] J.-M. Hervouet, Hydrodynamics of Free Surface Flows: Modelling With the Finite Element Method. John Wiley and Sons (2007). | Zbl

[30] D.L. Huggins, R.H. Piedrahita and T. Rumsey, Analysis of sediment transport modeling using computational fluid dynamics (cfd) for aquaculture raceways. Aquacult. Engrg. 31 (2004) 277-293.

[31] D.L. Huggins, R.H. Piedrahita and T. Rumsey, Use of computational fluid dynamics (cfd) for aquaculture raceway design to increase settling effectiveness. Aquacult. Engrg. 33 (2005) 167-180.

[32] S.C. James and V. Boriah, Modeling algae growth in an open-channel raceway. J Comput. Biol. 17 (2010) 895-906. | MR

[33] B. Khobalatte and B. Perthame, Maximum principle on the entropy and minimal limitations for kinetic schemes. Research Report RR-1628, Projet MENUSIN. INRIA (1992).

[34] K. Lange and F.J. Oyarzun, The attractiveness of the Droop equations. Math. Biosci. 111 (1992) 261-278. | MR | Zbl

[35] H.-P. Luo and M.H. Al-Dahhan, Analyzing and modeling of photobioreactors by combining first principles of physiology and hydrodynamics. Biotechnol. Bioengineer. 85 (2004) 382-393.

[36] F.B. Metting, Biodiversity and application of microalgae. J. Indust. Microbiol. Biotechnol. 17 (1996) 477-489.

[37] J. C. H. Peeters and P. Eilers, The relationship between light intensity and photosynthesis: a simple mathematical model. Hydrobiol. Bull. 12 (1978) 134-136.

[38] I. Perner, C. Posten and J. Broneske, Cfd-aided optimization of a plate photobioreactor for cultivation of microalgae. Chemie Ingenieur Technik 74 (2002) 865-869.

[39] I. Perner-Nochta and C. Posten, Simulations of light intensity variation in photobioreactors. J. Biotechnol. 131 (2007) 276-285.

[40] B. Perthame, Kinetic formulation of conservation laws. Oxford lecture series in mathematics and its applications. Oxford University Press (2002). | MR | Zbl

[41] J. Pruvost, L. Pottier and J. Legrand, Numerical investigation of hydrodynamic and mixing conditions in a torus photobioreactor. Chemical Engineer. Sci. 61 (2006) 4476-4489.

[42] L. Rodolfi, G.C. Zittelli, N. Bassi, G. Padovani, N. Biondi, G. Bonini and M.R. Tredici, Microalgae for Oil: Strain Selection, Induction of Lipid Synthesis and Outdoor Mass Cultivation in a Low-Cost Photobioreactor. Biotechnol. Bioeng. 102 (2009) 100-112.

[43] R. Rosello Sastre, Z. Coesgoer, I. Perner-Nochta, P. Fleck-Schneider and C. Posten, Scale-down of microalgae cultivations in tubular photo-bioreactors - a conceptual approach. J. Biotechnol. 132 (2007) 127-133.

[44] J. Sainte-Marie, Vertically averaged models for the free surface euler system. derivation and kinetic interpretation. Math. Models Methods Appl. Sci. 21 (2011) 459-490. | MR | Zbl

[45] A. Sciandra and P. Ramani, The limitations of continuous cultures with low rates of medium renewal per cell. J. Exp. Mar. Biol. Ecol. 178 (1994) 1-15.

[46] A. Sukenik, P.G. Falkowski and J. Bennett. Potential enhancement of photosynthetic energy conversion in algal mass culture. Biotechnol. Bioengineer. 30 (1987) 970-977.

[47] A. Sukenik, R.S. Levy, Y. Levy, P.G. Falkowski and Z. Dubinsky, Optimizing algal biomass production in an outdoor pond: a simulation model. J. Appl. Phycol. 3 (1991) 191-201.

[48] C. Vejrazka, M. Janssen, M. Streefland and R.H. Wijffels, Photosynthetic efficiency of chlamydomonas reinhardtii in flashing light. Biotechnol. Bioengineer. 108 (2011) 2905-2913.

[49] R.H. Wijffels and M.J. Barbosa, An outlook on microalgal biofuels. Science 329 (2010) 796-799.

[50] P.J.B. Williams and L.M.L. Laurens, Microalgae as biodiesel and biomass feedstocks: Review and analysis of the biochemistry, energetics and economics. Energy Environ. Sci. 3 (2010) 554-590.

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