Reaction automata working in sequential manner
RAIRO - Theoretical Informatics and Applications - Informatique Théorique et Applications, Tome 48 (2014) no. 1, pp. 23-38.

Based on the formal framework of reaction systems by Ehrenfeucht and Rozenberg [Fund. Inform. 75 (2007) 263-280], reaction automata (RAs) have been introduced by Okubo et al. [Theoret. Comput. Sci. 429 (2012) 247-257], as language acceptors with multiset rewriting mechanism. In this paper, we continue the investigation of RAs with a focus on the two manners of rule application: maximally parallel and sequential. Considering restrictions on the workspace and the λ-input mode, we introduce the corresponding variants of RAs and investigate their computation powers. In order to explore Turing machines (TMs) that correspond to RAs, we also introduce a new variant of TMs with restricted workspace, called s(n)-restricted TMs. The main results include the following: (i) for a language L and a function s(n), L is accepted by an s(n)-bounded RA with λ-input mode in sequential manner if and only if L is accepted by a log s(n)-bounded one-way TM; (ii) if a language L is accepted by a linear-bounded RA in sequential manner, then L is also accepted by a P automaton [Csuhaj-Varju and Vaszil, vol. 2597 of Lect. Notes Comput. Sci. Springer (2003) 219-233.] in sequential manner; (iii) the class of languages accepted by linear-bounded RAs in maximally parallel manner is incomparable to the class of languages accepted by RAs in sequential manner.

DOI : 10.1051/ita/2013047
Classification : 68Q05, 68Q45
Mots-clés : models of biochemical reactions, sequential reaction automata, space complexity, Turing machines 
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Okubo, Fumiya. Reaction automata working in sequential manner. RAIRO - Theoretical Informatics and Applications - Informatique Théorique et Applications, Tome 48 (2014) no. 1, pp. 23-38. doi : 10.1051/ita/2013047. http://archive.numdam.org/articles/10.1051/ita/2013047/

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